The Evil Quartet

A biologist called Jared Diamond coined the phrase ‘the evil quartet’ to describe the four main human-induced causes of extinction
1. Overkill.
2. Habitat destruction and fragmentation.
3. Impact of introduced species.
4. Chains of extinction.

Habitat destruction

Habitat destruction has played a key role in extinctions, especially related to tropical forest destruction.Factors contributing to habitat loss are: overpopulation, deforestation, pollution (air pollution, water pollution, soil contamination) and global warming or climate change.[citation needed]

Habitat size and numbers of species are systematically related. Physically larger species and those living at lower latitudes or in forests or oceans are more sensitive to reduction in habitat area.Conversion to "trivial" standardized ecosystems (e.g., monoculture following deforestation) effectively destroys habitat for the more diverse species that preceded the conversion. In some countries lack of property rights or lax law/regulatory enforcement necessarily leads to biodiversity loss (degradation costs having to be supported by the community).
A 2007 study conducted by the National Science Foundation found that biodiversity and genetic diversity are codependent—that diversity among species requires diversity within a species, and vice versa. "If any one type is removed from the system, the cycle can break down, and the community becomes dominated by a single species." At present, the most threatened ecosystems are found in fresh water, according to the Millennium Ecosystem Assessment 2005, which was confirmed by the "Freshwater Animal Diversity Assessment", organised by the biodiversity platform, and the French Institut de recherche pour le développement (MNHNP).
Co-extinctions are a form of habitat destruction. Co-extinction occurs when the extinction or decline in one accompanies the other, such as in plants and beetles.

Hybridization and genetics

In agriculture and animal husbandry, the green revolution popularized the use of conventional hybridization to increase yield by creating "high-yielding varieties". Often the handful of hybridized breeds originated in developed countries and were further hybridized with local varieties in the rest of the developing world to create high yield strains resistant to local climate and diseases. Local governments and industry have been pushing hybridization which has resulted in several of the indigenous breeds becoming extinct or threatened. Disuse because of unprofitability and uncontrolled intentional and unintentional cross-pollination and crossbreeding (genetic pollution), formerly huge gene pools of various wild and indigenous breeds have collapsed causing widespread genetic erosion and genetic pollution. This has resulted in loss of genetic diversity and biodiversity as a whole.
A genetically modified organism (GMO) is an organism whose genetic material has been altered using the genetic engineering techniques generally known as recombinant DNA technology. Genetically Modified (GM) crops today have become a common source for genetic pollution, not only of wild varieties but also of other domesticated varieties derived from relatively natural hybridization.
 Genetic erosion coupled with genetic pollution may be destroying unique genotypes, thereby creating a hidden crisis which could result in a severe threat to our food security. Diverse genetic material could cease to exist which would impact our ability to further hybridize food crops and 

livestock against more resistant diseases and climatic changes.

Exotic species
The widespread introduction of exotic species by humans is a potent threat to biodiversity. When exotic species are introduced to ecosystems and establish self-sustaining populations, the endemic species in that ecosystem that have not evolved to cope with the exotic species may not survive. The exotic organisms may be either predators, parasites, or simply aggressive species that deprive indigenous species of nutrients, water and light. These invasive species often have features, due to their evolutionary background and new environment, that make them highly competitive; able to become well-established and spread quickly, reducing the effective habitat of endemic species.
As a consequence of the above, if humans continue to combine species from different ecoregions, there is the potential that the world's ecosystems will end up dominated by relatively a few, aggressive, cosmopolitan "super-species". In 2004, an international team of scientists estimated that 10 percent of species would become extinct by 2050 because of global warming. “We need to limit climate change or we wind up with a lot of species in trouble, possibly extinct,” said Dr. Lee Hannah, a co-author of the paper and chief climate change biologist at the Center for Applied Biodiversity Science at Conservation International.

Genetic pollution

Purebred naturally evolved region specific wild species can be threatened with extinction through the process of genetic pollution i.e. uncontrolled hybridization, introgression and genetic swamping which leads to homogenization or replacement of local genotypes as a result of either a numerical and/or fitness advantage of introduced plant or animal. Nonnative species can bring about a form of extinction of native plants and animals by hybridization and introgression either through purposeful introduction by humans or through habitat modification, bringing previously isolated species into contact. These phenomena can be especially detrimental for rare species coming into contact with more abundant ones. The abundant species can interbreed with the rarer, swamping the entire gene pool and creating hybrids, thus driving the entire native stock to complete extinction. Attention has to be focused on the extent of this under appreciated problem that is not always apparent from morphological (outward appearance) observations alone. Some degree of gene flow may be a normal, evolutionarily constructive, process, and all constellations of genes and genotypes cannot be preserved. However, hybridization with or without introgression may, nevertheless, threaten a rare species' existence.